image registration software tool diffusion registration tool Search Results


image registration software tool diffusion registration tool  (Philips Healthcare)
90
Philips Healthcare image registration software tool diffusion registration tool
Image Registration Software Tool Diffusion Registration Tool, supplied by Philips Healthcare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/image registration software tool diffusion registration tool/product/Philips Healthcare
Average 90 stars, based on 1 article reviews
image registration software tool diffusion registration tool - by Bioz Stars, 2026-04
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halo software  (Indica Labs)
90
Indica Labs halo software
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Halo Software, supplied by Indica Labs, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/halo software/product/Indica Labs
Average 90 stars, based on 1 article reviews
halo software - by Bioz Stars, 2026-04
90/100 stars
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ondemand3dtm  (Cybermed Inc)
90
Cybermed Inc ondemand3dtm
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Ondemand3dtm, supplied by Cybermed Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ondemand3dtm/product/Cybermed Inc
Average 90 stars, based on 1 article reviews
ondemand3dtm - by Bioz Stars, 2026-04
90/100 stars
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imagej  (GraphPad Software Inc)
90
GraphPad Software Inc imagej
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Imagej, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej/product/GraphPad Software Inc
Average 90 stars, based on 1 article reviews
imagej - by Bioz Stars, 2026-04
90/100 stars
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velocity image-registration software  (Varian Medical)
90
Varian Medical velocity image-registration software
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Velocity Image Registration Software, supplied by Varian Medical, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/velocity image-registration software/product/Varian Medical
Average 90 stars, based on 1 article reviews
velocity image-registration software - by Bioz Stars, 2026-04
90/100 stars
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imaging software  (Nikon)
90
Nikon imaging software
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Imaging Software, supplied by Nikon, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imaging software/product/Nikon
Average 90 stars, based on 1 article reviews
imaging software - by Bioz Stars, 2026-04
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brainmaker software  (MBF Bioscience)
90
MBF Bioscience brainmaker software
(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The <t>BrainMaker</t> software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views
Brainmaker Software, supplied by MBF Bioscience, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/brainmaker software/product/MBF Bioscience
Average 90 stars, based on 1 article reviews
brainmaker software - by Bioz Stars, 2026-04
90/100 stars
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living image software version 2.3  (Xenogen Corporation)
90
Xenogen Corporation living image software version 2.3
(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The <t>BrainMaker</t> software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views
Living Image Software Version 2.3, supplied by Xenogen Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/living image software version 2.3/product/Xenogen Corporation
Average 90 stars, based on 1 article reviews
living image software version 2.3 - by Bioz Stars, 2026-04
90/100 stars
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dataviewer software (version 1.5.6.2  (Bruker Corporation)
90
Bruker Corporation dataviewer software (version 1.5.6.2
(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The <t>BrainMaker</t> software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views
Dataviewer Software (Version 1.5.6.2, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/dataviewer software (version 1.5.6.2/product/Bruker Corporation
Average 90 stars, based on 1 article reviews
dataviewer software (version 1.5.6.2 - by Bioz Stars, 2026-04
90/100 stars
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microscopy image registration overlay (miro) canvas software  (Bruker Corporation)
90
Bruker Corporation microscopy image registration overlay (miro) canvas software
(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The <t>BrainMaker</t> software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views
Microscopy Image Registration Overlay (Miro) Canvas Software, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/microscopy image registration overlay (miro) canvas software/product/Bruker Corporation
Average 90 stars, based on 1 article reviews
microscopy image registration overlay (miro) canvas software - by Bioz Stars, 2026-04
90/100 stars
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rover (region of interest visualization, evaluation, and image registration software package)  (ABX GmbH)
90
ABX GmbH rover (region of interest visualization, evaluation, and image registration software package)
(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The <t>BrainMaker</t> software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views
Rover (Region Of Interest Visualization, Evaluation, And Image Registration Software Package), supplied by ABX GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rover (region of interest visualization, evaluation, and image registration software package)/product/ABX GmbH
Average 90 stars, based on 1 article reviews
rover (region of interest visualization, evaluation, and image registration software package) - by Bioz Stars, 2026-04
90/100 stars
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mimcontouring advanced  (MIMVista corp)
90
MIMVista corp mimcontouring advanced
(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The <t>BrainMaker</t> software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views
Mimcontouring Advanced, supplied by MIMVista corp, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mimcontouring advanced/product/MIMVista corp
Average 90 stars, based on 1 article reviews
mimcontouring advanced - by Bioz Stars, 2026-04
90/100 stars
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Image Search Results


Key Resources Table

Journal: Neuron

Article Title: Transcriptional and functional divergence in lateral hypothalamic glutamate neurons that project to the lateral habenula and ventral tegmental area

doi: 10.1016/j.neuron.2021.09.020

Figure Lengend Snippet: Key Resources Table

Article Snippet: Cell segmentation (based on the DAPI image) and fluorescent puncta quantification were performed on the registered images using HALO software (Indica Labs).

Techniques: Virus, Plasmid Preparation, Recombinant, RNAscope, In Situ Hybridization, Multiplex Assay, Sequencing, Software

(a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The BrainMaker software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views

Journal: The Journal of comparative neurology

Article Title: Whole Mouse Brain Reconstruction and Registration to a Reference Atlas with Standard Histochemical Processing of Coronal Sections

doi: 10.1002/cne.24602

Figure Lengend Snippet: (a) Coronal sections from the brain are collected in a plate of 10 wells, with successive sections being placed in sequence in well 1 through 10 and then repeated such that each well contains a 1 in 10 series through the brain. Sections are processed for immunohistochemical labeling and then mounted onto slides, with each slide containing a 1 in 10 series, which are imaged. (b) The BrainMaker software (MBF Bioscience) first outlines the individual section on each slide and then renumbers them to put them in sequence for the whole brain. Beginning with section 1 adjacent sections in the whole brain series are then overlain and aligned automatically and adjusted manually. (c) The aligned whole brain image is reconstructed into a stack of images, which may be viewed in coronal (XY), topdown (XZ), sagittal (YZ) or 3D views

Article Snippet: Once the brain sections have been imaged, they are registered and reconstructed into a whole brain image volume using the BrainMaker software (MBF Bioscience, Williston, VT).

Techniques: Sequencing, Immunohistochemical staining, Labeling, Software